PTM Related Resources

PTM : Glycosylation        Type : Database

GlycoEpitope
Resource Type : DB
Description :
Carbohydrate chains occupy truly significant positions in various fields of life sciences and biotechnology. Recently, the wide-ranging involvement of carbohydrate chains in life sciences has been extended to such diverse functions as cell to cell recognition and communication in neuronal tissues an ...
Taxonomy : N/A
Visit : http://www.glycoepitope.jp/

Publication Information

Article : GlycoEpitope: A Database of Carbohydrate Epitopes and Antibodies
Author : Toshisuke Kawasaki, Hiromi Nakao, Tomoko Tominaga
Years : 2008
PubMed :

GlycoFish
Resource Type : DB
Description :
LIPID PROFILING & CELL ENGINEERING POST-DOCTORAL SCIENTIST An opening for a motivated and talented post-doctoral scientist in lipid profiling/ lipidomics and cellular engineering is available in the laboratory of Dr. Betenbaugh. Candidates should have a PhD in biochemistry, molecular biology, bioe ...
Taxonomy : Eukaryota, Animals
Visit : http://betenbaugh.jhu.edu/GlycoFish/

Publication Information

Article : GlycoFish: a database of zebrafish N-linked glycoproteins identified using SPEG method coupled with LC/MS.
Author : Deniz Baycin-Hizal , Yuan Tian , Ilhan Akan , Elena Jacobson , Dean Clark , Alexander Wu , Russell Jampol , Karen Palter Michael Betenbaugh , and Hui Zhang
Years : 2011
PubMed : 21591763

GlycoFly
Resource Type : DB
Description :
LIPID PROFILING & CELL ENGINEERING POST-DOCTORAL SCIENTIST An opening for a motivated and talented post-doctoral scientist in lipid profiling/ lipidomics and cellular engineering is available in the laboratory of Dr. Betenbaugh. Candidates should have a PhD in biochemistry, molecular biology, bioe ...
Taxonomy : Eukaryota, Animals
Visit : http://betenbaugh.jhu.edu/GlycoFly/

Publication Information

Article : GlycoFly: a database of Drosophila N-linked glycoproteins identified using SPEG--MS techniques.
Author : Deniz Baycin-Hizal , Yuan Tian , Ilhan Akan , Elena Jacobson , Dean Clark , Jeffrey Chu , Karen Palter , Hui Zhang , and Michael . Betenbaugh
Years : 2011
PubMed : 21480662

GlycomeDB
Resource Type : DB
Description :
Carbohydrates are the third major class of biological macromolecules, besides proteins and DNA molecules. They are involved in numerous biological processes, among them protein folding and inter/intra cell recognition. In contrast to DNA and proteins neither a comprehensive database for carbohydrate ...
Taxonomy : N/A
Visit : http://www.glycome-db.org/

Publication Information

Article : GlycomeDB--a unified database for carbohydrate structures.
Author : René Ranzinger, Stephan Herget, Claus-Wilhelm von der Lieth and Martin Frank
Years : 2011
PubMed : 21045056

GlycoProtDB
Resource Type : DB
Description :
GlycoProtDB is a glycoprotein database providing information of Asn (N)-glycosylated proteins and their glycosylated site(s), which were constructed by employing a bottom-up strategy using actual glycopeptide sequences identified by LC/MS-based glycoproteomic technologies. Current contents are glyco ...
Taxonomy : N/A
Visit : http://jcggdb.jp/rcmg/gpdb/index.action

Publication Information

Article : Large-scale identification of N-glycosylated proteins of mouse tissues and construction of a glycoprotein database, GlycoProtDB.
Author : Hiroyuki Kaji , Toshihide Shikanai , Akiko Sasaki-Sawa , Hongling Wen , Mika Fujita , Yoshinori Suzuki , Daisuke Sugahara , Hiromichi Sawaki , Yoshio Yamauchi , Takashi Shinkawa , Masato Taoka , Nobuhiro Takahashi , Toshiaki Isobe , and Hisashi Narimatsu
Years : 2012
PubMed : 22823882

UnicarbKB
Resource Type : DB
Description :
UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The knowledgebase will offer a freely accessible and information-rich resource supported by querying interfaces, annotation technologies and the ...
Taxonomy : N/A
Visit : http://unicarbkb.org

Publication Information

Article : UniCarbkb: building a knowledge platform for glycoproteomics
Author : Matthew P. Campbell, Robyn Peterson, Julien Mariethoz, Elisabeth Gasteiger, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Frederique Lisacek and Nicolle H. Packer
Years : 2014
PubMed : 24234447

GLYCOSCIENCES.de
Resource Type : DB
Description :
The human genome seems to encode for not more than 30,000 to 40,000 proteins. A major challenge is to understand how posttranslational events, such as glycosylation, affect the activities and functions of these proteins in health and disease. The importance of protein glycosylation is becoming widel ...
Taxonomy : N/A
Visit : http://www.glycosciences.de/

Publication Information

Article : GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research.
Author : Thomas Lütteke, Andreas Bohne-Lang, Alexander Loss,Thomas Goetz, Martin Frank, and Claus-W. von der Lieth
Years : 2006
PubMed : 16239495

GlycoSuiteDB
Resource Type : DB
Description :
UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The knowledgebase will offer a freely accessible and information-rich resource supported by querying interfaces, annotation technologies and the ...
Taxonomy : N/A
Visit : http://www.unicarbkb.org/

Publication Information

Article : GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources.
Author : Catherine A. Cooper, Hiren J. Joshi, Mathew J. Harrison, Marc R. Wilkins and Nicolle H. Packer
Years : 2003
PubMed : 12520065

CFG
Resource Type : DB
Description :
The CFG's Glycan Structures Database offers detailed structural and chemical information for thousands of glycans, including both synthetic glycans and glycans isolated from biological sources. Each glycan structure in the database is linked to relevant entries in CFG and external databases (includi ...
Taxonomy : N/A
Visit : http://www.functionalglycomics.org/glycomics/molecule/jsp/carbohydrate/carbMoleculeHome.jsp

Publication Information

Article : Glycan array data management at Consortium for Functional Glycomics.
Author : Maha Venkataraman, Ram Sasisekharan, Rahul Raman
Years : 2015
PubMed : 25753711

ProGlycProt
Resource Type : DB
Description :
ProGlycProt (Prokaryotic Glycoproteins) is a manually curated, comprehensive repository of experimentally characterized bacterial glycoproteins and archaeal glycoproteins, generated from an exhaustive literature search. This is the focused beginning of an effort to provide concise relevant informati ...
Taxonomy : Prokaryotes
Visit : http://www.proglycprot.org/

Publication Information

Article : ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins.
Author : Aadil H. Bhat, Homchoru Mondal, Jagat S. Chauhan, Gajendra P. S. Raghava, Amrish Methi and Alka Rao
Years : 2012
PubMed : 22039152

UniPep
Resource Type : DB
Description :
Unipep is a project to provide access to proteomics data from the Serum Biomarker group at the Swiss Federal Institute of Technology (ETH) in Zurich Switzerland, and the Institute for Systems Biology (ISB) in Seattle, Washington USA. In the initial phase, we provide a searchable interface to a libr ...
Taxonomy : Eukaryota, Animals
Visit : http://www.unipep.org/

Publication Information

Article : UniPep--a database for human N-linked glycosites: a resource for biomarker discovery.
Author : Hui Zhang, Paul Loriaux, Jimmy Eng, David Campbell, Andrew Keller, Pat Moss, Richard Bonneau, Ning Zhang, Yong Zhou, Bernd Wollscheid, Kelly Cooke, Eugene C Yi, Hookeun Lee, Elaine R Peskind, Jing Zhang, Richard D Smith and Ruedi Aebersold
Years : 2006
PubMed : 16901351

O-GlycBase
Resource Type : DB
Description :
The Center for Biological Sequence Analysis at the Technical University of Denmark was formed in 1993, and conducts basic research in the field of bioinformatics and systems biology. The group of +90 scientists, working in ten specialist research groups, has a highly multi-disciplinary profile (mole ...
Taxonomy : N/A
Visit : http://www.cbs.dtu.dk/databases/OGLYCBASE/

Publication Information

Article : O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins.
Author : Ramneek Gupta, Hanne Birch, Kristoffer Rapacki, Soren Brunak and Jan E. Hansen
Years : 1999
PubMed : 9847232