PTM Related Resources

PTM : Methylation        Type : Tool

BPB-PPMS
Resource Type : Tool
Description :
Protein methylation is one type of reversible post-translational modifications (PTMs), which plays vital roles in many cellular processes such as transcription activity, DNA repair. Experimental identification of methylation sites on proteins without prior knowledge is costly and time-consuming. In ...
Taxonomy : N/A
Visit : http://www.bioinfo.bio.cuhk.edu.hk/bpbpp?ms

Publication Information

Article : Computational Identification of Protein Methylation Sites through Bi-Profile Bayes Feature Extraction
Author : Jianlin Shao, Dong Xu, Sau-Na Tsai, Yifei Wang, Sai-Ming Ngai
Years : 2009
PubMed : 19290060

iMethyl-PseAAC
Resource Type : Tool
Description :
The web-server iMethyl-PseAAC is a web server that could predict methylation sites in proteins. With the assistance of SVM, the highlight of iMethyl-PseAAC is to employ amino acid sequence features extracted from the sequence evolution information via grey system model (Grey-PSSM). Caveat To obtain ...
Taxonomy : N/A
Visit : http://www.jci-bioinfo.cn/iMethyl-PseAAC

Publication Information

Article : iMethyl-PseAAC: Identification of Protein Methylation Sites via a Pseudo Amino Acid Composition Approach
Author : Wang-Ren Qiu, Xuan Xiao, Wei-Zhong Lin, and Kuo-Chen Chou
Years : 2014
PubMed : 24977164

MASA
Resource Type : Tool
Description :
Studies within the last few years have identified that protein methylation occurring on histones and other proteins are involved in the regulation of gene transcription. Several previous works were developed to computationally identify the potential methylation sites on lysine and arginine. With the ...
Taxonomy : N/A
Visit : http://MASA.mbc.nctu.edu.tw/

Publication Information

Article : Incorporating structural characteristics for identification of protein methylation sites.
Author : Dray-Ming Shien, Tzong-Yi Lee, Wen-Chi Chang, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang andHsien-Da Huang
Years : 2009
PubMed : 19263424

MeMo
Resource Type : Tool
Description :
MeMo is the first protein methylation prediction server based on SVM (support vector machine). Limited by available training data, at present MeMo only focuses on Arginine and Lysine sites. Users could submit their protein sequences to predict which arginine and Lysine sites are undergoing methyla ...
Taxonomy : N/A
Visit : http://www.bioinfo.tsinghua.edu.cn/~tigerchen/memo.html

Publication Information

Article : MeMo: a web tool for prediction of protein methylation modifications.
Author : Hu Chen, Yu Xue, Ni Huang, Xuebiao Yao1 and Zhirong Sun
Years : 2006
PubMed : 16845004